Serveur d'exploration sur l'OCR

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Figure mining for biomedical research

Identifieur interne : 000844 ( Main/Exploration ); précédent : 000843; suivant : 000845

Figure mining for biomedical research

Auteurs : Raul Rodriguez-Esteban [États-Unis] ; Ivan Iossifov [États-Unis]

Source :

RBID : ISTEX:DEB89450440496EF4DB902425DF7B9C68188C227

English descriptors

Abstract

Motivation: Figures from biomedical articles contain valuable information difficult to reach without specialized tools. Currently, there is no search engine that can retrieve specific figure types. Results: This study describes a retrieval method that takes advantage of principles in image understanding, text mining and optical character recognition (OCR) to retrieve figure types defined conceptually. A search engine was developed to retrieve tables and figure types to aid computational and experimental research. Availability: http://iossifovlab.cshl.edu/figurome Contact: raul.rodriguez-esteban@pfizer.com

Url:
DOI: 10.1093/bioinformatics/btp318


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

<record>
<TEI wicri:istexFullTextTei="biblStruct">
<teiHeader>
<fileDesc>
<titleStmt>
<title>Figure mining for biomedical research</title>
<author>
<name sortKey="Rodriguez Esteban, Raul" sort="Rodriguez Esteban, Raul" uniqKey="Rodriguez Esteban R" first="Raul" last="Rodriguez-Esteban">Raul Rodriguez-Esteban</name>
</author>
<author>
<name sortKey="Iossifov, Ivan" sort="Iossifov, Ivan" uniqKey="Iossifov I" first="Ivan" last="Iossifov">Ivan Iossifov</name>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">ISTEX</idno>
<idno type="RBID">ISTEX:DEB89450440496EF4DB902425DF7B9C68188C227</idno>
<date when="2009" year="2009">2009</date>
<idno type="doi">10.1093/bioinformatics/btp318</idno>
<idno type="url">https://api.istex.fr/document/DEB89450440496EF4DB902425DF7B9C68188C227/fulltext/pdf</idno>
<idno type="wicri:Area/Istex/Corpus">000449</idno>
<idno type="wicri:Area/Istex/Curation">000442</idno>
<idno type="wicri:Area/Istex/Checkpoint">000366</idno>
<idno type="wicri:doubleKey">1367-4803:2009:Rodriguez Esteban R:figure:mining:for</idno>
<idno type="wicri:source">PubMed</idno>
<idno type="RBID">pubmed:19439564</idno>
<idno type="wicri:Area/PubMed/Corpus">000044</idno>
<idno type="wicri:Area/PubMed/Curation">000044</idno>
<idno type="wicri:Area/PubMed/Checkpoint">000044</idno>
<idno type="wicri:Area/Ncbi/Merge">000071</idno>
<idno type="wicri:Area/Ncbi/Curation">000071</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000071</idno>
<idno type="wicri:Area/Main/Merge">000852</idno>
<idno type="wicri:source">INIST</idno>
<idno type="RBID">Pascal:09-0354746</idno>
<idno type="wicri:Area/PascalFrancis/Corpus">000220</idno>
<idno type="wicri:Area/PascalFrancis/Curation">000559</idno>
<idno type="wicri:Area/PascalFrancis/Checkpoint">000197</idno>
<idno type="wicri:doubleKey">1367-4803:2009:Rodriguez Esteban R:figure:mining:for</idno>
<idno type="wicri:Area/Main/Merge">000A91</idno>
<idno type="wicri:Area/Main/Curation">000844</idno>
<idno type="wicri:Area/Main/Exploration">000844</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title level="a">Figure mining for biomedical research</title>
<author>
<name sortKey="Rodriguez Esteban, Raul" sort="Rodriguez Esteban, Raul" uniqKey="Rodriguez Esteban R" first="Raul" last="Rodriguez-Esteban">Raul Rodriguez-Esteban</name>
<affiliation wicri:level="2">
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Systems Biology, Pfizer Inc., Cambridge, MA 02139 and Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11742</wicri:regionArea>
<placeName>
<region type="state">État de New York</region>
</placeName>
</affiliation>
<affiliation>
<wicri:noCountry code="no comma">To whom correspondence should be addressed.</wicri:noCountry>
</affiliation>
</author>
<author>
<name sortKey="Iossifov, Ivan" sort="Iossifov, Ivan" uniqKey="Iossifov I" first="Ivan" last="Iossifov">Ivan Iossifov</name>
<affiliation wicri:level="2">
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Systems Biology, Pfizer Inc., Cambridge, MA 02139 and Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11742</wicri:regionArea>
<placeName>
<region type="state">État de New York</region>
</placeName>
</affiliation>
</author>
</analytic>
<monogr></monogr>
<series>
<title level="j">Bioinformatics</title>
<idno type="ISSN">1367-4803</idno>
<idno type="eISSN">1460-2059</idno>
<imprint>
<publisher>Oxford University Press</publisher>
<date type="published" when="2009-08-15">2009-08-15</date>
<biblScope unit="volume">25</biblScope>
<biblScope unit="issue">16</biblScope>
<biblScope unit="page" from="2082">2082</biblScope>
<biblScope unit="page" to="2084">2084</biblScope>
</imprint>
<idno type="ISSN">1367-4803</idno>
</series>
<idno type="istex">DEB89450440496EF4DB902425DF7B9C68188C227</idno>
<idno type="DOI">10.1093/bioinformatics/btp318</idno>
<idno type="ArticleID">btp318</idno>
</biblStruct>
</sourceDesc>
<seriesStmt>
<idno type="ISSN">1367-4803</idno>
</seriesStmt>
</fileDesc>
<profileDesc>
<textClass>
<keywords scheme="KwdEn" xml:lang="en">
<term>Abstracting and Indexing as Topic (methods)</term>
<term>Biomedical Research</term>
<term>Computational Biology (methods)</term>
<term>Data Mining (methods)</term>
<term>Pattern Recognition, Automated (methods)</term>
</keywords>
<keywords scheme="MESH" qualifier="methods" xml:lang="en">
<term>Abstracting and Indexing as Topic</term>
<term>Computational Biology</term>
<term>Data Mining</term>
<term>Pattern Recognition, Automated</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Biomedical Research</term>
</keywords>
</textClass>
<langUsage>
<language ident="en">en</language>
</langUsage>
</profileDesc>
</teiHeader>
<front>
<div type="abstract">Motivation: Figures from biomedical articles contain valuable information difficult to reach without specialized tools. Currently, there is no search engine that can retrieve specific figure types. Results: This study describes a retrieval method that takes advantage of principles in image understanding, text mining and optical character recognition (OCR) to retrieve figure types defined conceptually. A search engine was developed to retrieve tables and figure types to aid computational and experimental research. Availability: http://iossifovlab.cshl.edu/figurome Contact: raul.rodriguez-esteban@pfizer.com</div>
</front>
</TEI>
<affiliations>
<list>
<country>
<li>États-Unis</li>
</country>
<region>
<li>État de New York</li>
</region>
</list>
<tree>
<country name="États-Unis">
<region name="État de New York">
<name sortKey="Rodriguez Esteban, Raul" sort="Rodriguez Esteban, Raul" uniqKey="Rodriguez Esteban R" first="Raul" last="Rodriguez-Esteban">Raul Rodriguez-Esteban</name>
</region>
<name sortKey="Iossifov, Ivan" sort="Iossifov, Ivan" uniqKey="Iossifov I" first="Ivan" last="Iossifov">Ivan Iossifov</name>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/OcrV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000844 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000844 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Ticri/CIDE
   |area=    OcrV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     ISTEX:DEB89450440496EF4DB902425DF7B9C68188C227
   |texte=   Figure mining for biomedical research
}}

Wicri

This area was generated with Dilib version V0.6.32.
Data generation: Sat Nov 11 16:53:45 2017. Site generation: Mon Mar 11 23:15:16 2024